shRNA Shared Technology Resource

Overview of Services


Short hairpin RNA’s (shRNAs) can efficiently suppress gene expression in human cells.
The shRNA Shared Technology Resource will provide investigators at MUSC access to genome wide human and mouse libraries that together encode a total of almost 160,000 shRNA clones against over 41,000 genes.
The resource utilizes The RNAi Consortium’s (TRC) genome-wide lentiviral mouse and human libraries and investigators will have the option of ordering shRNA’s targeting single or multiple genes, gene family sets as well as pathway specific pooled libraries. The library will allow access to multiple shRNAs for a single gene which is important for validation against off target effects.
This technology holds tremendous power, and is ready to help investigators at MUSC work toward breakthrough discoveries.


shRNA Library Features

  • Largest and most validated shRNA collection 

  • Human Library: 20,018 genes, 129,695 clones (1500-96 well plates)

  • Mouse Library: 21,171 genes, 118,062 clones (1374-96 well plates) 

  • Hairpins comprised of a 21mer base stem and a 6 base loop designed against NCBI REFSEQ

  • Sequence, specificity & position scoring with the Broad Institute algorithm

  • A minimum of 3-5 shRNA constructs are created for each target gene to provide varying levels of knockdown and to target different regions of mRNA transcript

  • For any given RefSeq, there is often a shRNA clone targeting the 3'UTR for use in phenotypic rescue studies using cDNA expression constructs.


Lentiviral Vector Features:

  • shRNA cloned into the pLKO vector developed by the Broad Institute

  • Allows for both stable or transient transfection

  • self-inactivating replication incompetent viral particles can be produced in packaging cells (HEK293T) by co-transfection with compatible packaging plasmids

  • Stable gene silencing is selected using the puromycin selectable marker

  • Integrates for long-term knockdown

  • Transduces virtually any cell type (dividing or non-dividing)

  • No interferon response

  • Lack of recombination issues


Leadership


Director
David P. Turner PhD
Assistant Professor, Department of Pathology & Laboratory Medicine

Location and hours of operation


Hours


Location

9 - 5
Monday to Friday   

Bioengineering Building (BE422)
James E. Clyburn Research Center 
Jonathan Lucas Street

Links and Resources


Contacts

Name Role Phone Email Location
David P. Turner PhD
Director
 
843-876-2232
 
turnerda@musc.edu
 

 

Services

Name Description Price
shRNA Project Request 

Initiate shRNA Project Request by clicking on the box to the right.

 
*
Glycerol Clones: 1-20 

2ml culture

 
*
Glycerol Clones: 21-50 

Glycerol Stock

96 Well Format

 
*
High titer virus production 

109 virus paritcles/ml

 
*
Purified Vector Clones 1-20 

Purified Vector

>1ug

 
*
Purified Vector Clones 21-50 

Purified Vector

96 well format

 
*

Services


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